Bowel and bottom
Anal fistula: symptoms, causes, surgery and recovery
An anal fistula is a small tunnel that develops between the end of the bowel and the skin near the anus, usually after an infection that forms an abscess. It causes discomfort, discharge and skin irritation and will not usually get better on its own. Surgery is recommended in most cases, and the aim is to heal the fistula without damaging the muscles that control the bowel.
Last checked: 2026-10-11
Key facts
At a glance.
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What it is
The NHS describes an anal fistula as a small tunnel between the end of the bowel and the skin near the opening of the bottom (anus).
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Symptoms
Skin irritation, a constant throbbing pain that may be worse when you sit, move, poo or cough, smelly discharge, and passing pus or blood when you poo.
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Main cause
The NHS says most anal fistulas develop after an anal abscess, when the abscess does not heal properly after the pus has drained away.
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Will it go away?
The NHS says anal fistulas will not usually get better on their own and rarely heal if left untreated. Surgery is recommended in most cases.
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Surgery
Options include fistulotomy, seton techniques, advancement flap and LIFT procedures. Many people do not need to stay overnight in hospital.
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Main risk
The NHS says the aim is to heal the fistula and avoid damaging the sphincter muscles, which could result in loss of bowel control.
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See a GP
The NHS says to see a GP if you have persistent symptoms of an anal fistula.
What are the symptoms of an anal fistula?
The NHS lists skin irritation around the anus, a constant, throbbing pain that may be worse when you sit down, move around, poo or cough, smelly discharge from near your anus, passing pus or blood when you poo, and swelling and redness around your anus with a high temperature if you also have an abscess. Difficulty controlling bowel movements (bowel incontinence) can occur in some cases.
The end of the fistula might be visible as a hole in the skin near your anus, although this may be difficult for you to see yourself, according to the NHS. University Hospitals Sussex says it may appear as a small opening or sore near the anus, and that symptoms may improve when the fistula drains but often return if it does not heal.
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Pain around the anus, often throbbing and worse on sitting.
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Smelly discharge, pus or blood.
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Itching or skin irritation.
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Swelling, redness and fever if an abscess forms.
How is an anal fistula treated?
The NHS says surgery is often needed to treat anal fistulas because they do not usually heal by themselves, and there are several different procedures. The best option depends on the position of your fistula and whether it is a single channel or branches off in different directions. Sometimes you may need an initial examination under general anaesthetic to help determine the best treatment.
The aim of surgery is to heal the fistula and avoid damaging the sphincter muscles, the ring of muscles that open and close the anus, because damaging them could result in loss of bowel control. The surgeon will talk to you about the options. Surgery is usually carried out under general anaesthetic, and in many cases it is not necessary to stay in hospital overnight.
| Procedure | What it involves | Points to know |
|---|---|---|
| Fistulotomy | Cutting along the whole length of the fistula so it heals as a flat scar | The most common and most effective for many fistulas, but usually only suitable if the fistula does not pass through much sphincter muscle. |
| Seton | A piece of surgical thread left in the fistula for several weeks to keep it open and draining | Used if the fistula passes through a significant part of the sphincter; loose setons drain but do not cure, tighter setons may be used to cut through slowly. |
| Advancement flap | Cutting or scraping out the fistula and covering the internal opening with a flap of tissue from the rectum | Lower success rate than fistulotomy, but avoids cutting the sphincter muscles. |
| LIFT procedure | The sphincter muscles are moved apart and the fistula is sealed at both ends and cut open | Promising results so far, but more research is needed on how well it works. |
| Endoscopic ablation or laser | An electrode or laser is used to seal the fistula | The NHS says endoscopic ablation works well; there are uncertainties about how well laser works. |
| Fibrin glue | Glue is injected into the fistula under general anaesthetic | The only non-surgical option; generally less effective than fistulotomy and results may not last. |
What is an anal fistula?
An anal fistula is a small tunnel that develops between the end of the bowel and the skin near the opening of the bottom, according to the NHS. It is usually caused by an infection near the anus that results in a collection of pus (an abscess) in the nearby tissue. When the pus drains away, it can leave a small channel behind.
University Hospitals Sussex says fistulas vary in complexity. Low (simple) fistulas are close to the skin and involve little or no muscle, and are easier to treat. High (complex) fistulas pass through or near important muscles, are more difficult to treat and may need staged treatment. It adds that some fistulas form between the bowel and the vagina, which may cause passing gas through the vagina, discharge or stool from the vagina and recurrent infections.
It says anal fistulas are not usually life-threatening, but they rarely heal on their own.
What causes an anal fistula?
The NHS says most anal fistulas develop after an anal abscess, and you can get one if the abscess does not heal properly after the pus has drained away. University Hospitals Sussex says around 3 in 4 fistulas develop after an abscess, that small glands in the anal canal can become blocked and infected, and that when the abscess drains a tunnel may remain.
Less common causes listed by the NHS include Crohn's disease, diverticulitis, hidradenitis suppurativa, infection with tuberculosis (TB) or HIV, and a complication of surgery near the anus. University Hospitals Sussex also lists previous injury, radiotherapy, some sexually transmitted infections and, rarely, cancer.
How is an anal fistula diagnosed?
The NHS says to see a GP if you have persistent symptoms. The GP will ask about your symptoms and whether you have any bowel conditions, and may ask to examine your anus and gently insert a finger inside it (a rectal examination) to check for signs of a fistula.
If the GP thinks you might have a fistula, they can refer you to a specialist called a colorectal surgeon. Tests you may have include a further physical and rectal examination, a proctoscopy, where a special telescope with a light is used to look inside your anus, and an ultrasound, MRI or CT scan.
Anal abscess and when to get urgent help
An abscess near the anus is the usual starting point for a fistula. The NHS lists swelling and redness around your anus and a high temperature among the symptoms if you also have an abscess. University Hospitals Sussex says that if there is an abscess urgent treatment is required, which may include drainage of the abscess and placement of a seton, and that at this stage the focus is on controlling infection rather than closing the fistula.
It says to seek medical advice urgently if you develop increasing pain not relieved by medication, fever or chills, heavy bleeding, signs of infection such as redness, swelling or warmth, or new or worsening symptoms, and that you can contact your GP, NHS 111 or urgent care services.
Recovery and living with a seton
University Hospitals Sussex says a seton does not cure the fistula but helps control symptoms while further treatment is planned. After placement you may have mild discomfort, a feeling of a small knot or tugging, and ongoing discharge, which it describes as normal. Pain is usually managed with paracetamol or ibuprofen, and you may be advised to gently move the seton while washing to prevent blockage. It may stay in place for several months.
It says most people recover quickly, walking normally the next day and returning to light activities within a few days and work within a few days to a week, and to avoid heavy lifting or strenuous activity for 1 to 2 weeks. To stay comfortable it suggests warm baths for 10 to 15 minutes, keeping the area clean and dry, using soft gauze or pads, barrier cream if the skin is irritated, a high-fibre diet and plenty of fluids.
It says even with treatment fistulas can sometimes recur. If a seton falls out or breaks, contact your surgical team for advice rather than trying to replace it yourself. Recovery times differ with the procedure and your own trust's advice takes priority.
NHS and private routes
On the NHS the route is usually a GP appointment and then referral to a colorectal surgeon. An abscess is treated urgently. The NHS says many people do not need to stay in hospital overnight after surgery, although some may need to stay for a few days.
Private colorectal surgery is also available for assessment and procedures. Whichever route you use, ask which procedure is proposed and why, what the risk to bowel control is, and whether staged treatment is likely.
Frequently asked
Questions people ask.
Quick, plain-English answers to the questions we hear most.
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What is an anal fistula?
The NHS describes it as a small tunnel that develops between the end of the bowel and the skin near the opening of the bottom, usually caused by an infection that leads to an abscess.
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What are the symptoms of an anal fistula?
Skin irritation around the anus, constant throbbing pain that can be worse when sitting or pooing, smelly discharge, and passing pus or blood when you poo, according to the NHS.
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What causes an anal fistula?
The NHS says most develop after an anal abscess. Less common causes include Crohn's disease, diverticulitis, hidradenitis suppurativa, TB, HIV and complications of surgery near the anus.
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Can an anal fistula heal on its own?
Rarely. The NHS says anal fistulas will not usually get better on their own and usually require surgery as they rarely heal if left untreated.
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How is an anal fistula treated?
Usually with surgery. The NHS lists fistulotomy, seton techniques, advancement flap, LIFT, endoscopic ablation, laser and fibrin glue, depending on the position and shape of the fistula.
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What is a seton?
A piece of surgical thread left in the fistula for several weeks to keep it open and draining. The NHS says loose setons allow fistulas to drain but do not cure them.
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Will surgery cause incontinence?
The aim is to avoid it. The NHS says damaging the sphincter muscles could result in bowel incontinence, and another procedure may be recommended instead if the risk is considered too high.
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How long does it take to recover from fistula surgery?
University Hospitals Sussex says most people can return to light activity within a few days and work within a few days to a week, but a fistula can need staged treatment and setons can stay for several months.
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Do I need to stay in hospital for anal fistula surgery?
The NHS says in many cases it is not necessary to stay in hospital overnight, although some people may need to stay for a few days.
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How is an anal fistula diagnosed?
By examination of the area and a rectal examination, then possibly a proctoscopy and an ultrasound, MRI or CT scan arranged by a colorectal surgeon, according to the NHS.
Where this comes from
Sources and checking.
This guide is for information, not medical advice.
Your GP or consultant knows your history and can tell you which parts apply to you. If your symptoms are severe, rapidly worsening, or come with red-flag features, seek urgent medical care. Figures and availability change, so treat them as a guide and confirm with the provider.
Published 2026-10-11, next review 2027-10-11.
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NHS: Anal fistula, https://www.nhs.uk/conditions/anal-fistula/ , retrieved October 2026
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NHS: Anal fistula treatment, https://www.nhs.uk/conditions/anal-fistula/treatment/ , retrieved October 2026
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University Hospitals Sussex NHS Foundation Trust: Anal fistulas patient information, https://www.uhsussex.nhs.uk/resources/anal-fistulas/ , retrieved October 2026
Related guides
Keep reading.
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Anal sepsis
Abscess and infection near the anus.
Read guide -
Anal fissure
A small tear that causes pain on pooing.
Read guide -
Anal bleeding
Common causes of bleeding from the bottom.
Read guide -
Anal itching
Irritation around the anus.
Read guide -
Anal cancer
A rare cancer with some overlapping symptoms.
Read guide -
Hidradenitis suppurativa
A skin condition that can cause fistulas.
Read guide -
Crohn's disease
A bowel condition linked with fistulas.
Read guide