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Birth conditions of the brain

Encephalocele: what it is, causes, surgery and outlook

An encephalocele is a rare birth condition in which part of the skull has not formed properly, so a sac containing brain tissue or its coverings sits outside the skull. Great Ormond Street Hospital says it always needs an operation, with timing depending on the covering, and that the outlook varies with location and the amount of brain tissue involved.

Last checked: 2026-10-18

Key facts

At a glance.

  • What it is

    Great Ormond Street Hospital (GOSH) says an encephalocele is a rare congenital type of neural tube defect where part of the skull has not formed properly so a portion of brain tissue and associated structures are outside the skull.

  • How common

    GOSH says encephaloceles affect between 1 and 2 in every 10,000 births.

  • Cause

    GOSH says neural tube defects are not well understood, but folic acid can reduce the risk in future pregnancies. In most cases an encephalocele develops sporadically and is not passed on from parent to child.

  • Diagnosis

    GOSH says a large encephalocele may be seen on a routine prenatal ultrasound. Otherwise it is usually visible at birth and confirmed with scans such as MRI.

  • Treatment

    GOSH says encephaloceles always require correction with an operation under general anaesthetic. If the sac has only a thin membrane covering, surgery soon after birth is needed; if skin-covered, it can be delayed for a month or two.

  • Hydrocephalus

    GOSH says hydrocephalus, a build-up of cerebrospinal fluid, can occur. If present, a shunt is inserted to drain excess fluid into the abdomen.

  • Outlook

    GOSH says the outlook is variable depending on location and the amount of tissue outside the skull. The majority of children with no learning disabilities grow up to lead a normal life, working and raising a family.

  • Folic acid

    The NHS recommends a 400 microgram folic acid supplement daily for anyone pregnant, trying or who could get pregnant until 12 weeks, and says some women at higher risk are advised a 5mg dose, after speaking to a doctor.

What is an encephalocele?

GOSH describes an encephalocele as a rare congenital (present at birth) type of neural tube defect in which part of the skull has not formed properly, so a portion of brain tissue and associated structures are outside the skull. The protruding sac may be covered with skin or with a thin membrane.

GOSH explains the naming. If just the covering of the brain (the meninges) is outside the skull, it tends to be called a meningocele. If both brain tissue and meninges are outside, it can be called an encephalomeningocele. It can affect any area of the skull: the middle of the back of the head, the middle of the top of the head, or the nose and forehead region. A swelling in the nose and forehead region tends to be called a "midfacial cleft" and is explained separately by GOSH.

What causes an encephalocele?

GOSH explains that in early development the brain and spinal cord start as a tube-like structure, the neural tube, which is open at either end. The openings close within the first weeks of pregnancy and the tube goes on to form the brain and spinal cord. If it fails to close properly the result is a group of problems called neural tube defects.

GOSH says we do not really understand what causes neural tube defects in general, but folic acid can reduce the risk of them happening in future pregnancies. In most cases an encephalocele develops sporadically, "out of the blue", and is not passed from parent to child. It can, however, be a feature of syndromes such as Dandy-Walker syndrome or Chiari malformation, which may have a genetic component, and a family history of neural tube defects increases the risk of having a child with an encephalocele.

Where does an encephalocele occur and who is affected?

GOSH says racial background seems to affect where it occurs: in Western babies a posterior encephalocele (back of the head) is more common, whereas in Eastern babies an anterior encephalocele (front of the head) is more common. Females are more likely to have a posterior encephalocele and males an anterior one.

The location, type and amount of brain tissue outside the skull all shape the treatment plan and outlook. GOSH says anterior encephaloceles are less likely to contain brain tissue, so tend to produce fewer symptoms, and that very large encephaloceles may be incompatible with life, so affected babies may not survive the pregnancy.

What are the signs and symptoms?

The sac or lump is the visible sign. GOSH says the symptoms are very variable, and that many children have no symptoms other than the lump itself. When symptoms occur they can include the following.

  • Hydrocephalus: cerebrospinal fluid (CSF) builds up in the cavities of the brain and increases pressure on the brain; GOSH says brain tissue outside the skull reduces CSF flow.

  • Developmental delay: reaching milestones such as sitting, crawling or walking later than other children, and sometimes being smaller than children of the same age.

  • Learning disabilities that continue throughout life.

  • Seizures (fits or convulsions).

  • Visual impairment.

How is an encephalocele diagnosed?

GOSH says that if the encephalocele is large it may be seen on routine prenatal ultrasound, which may allow planning of a caesarean section if vaginal birth could be risky. Otherwise, in most cases an encephalocele is visible at birth and easily diagnosed. Very small ones, especially in the nose and forehead area, may not be so visible.

Once suspected, the diagnosis is usually confirmed with imaging, such as MRI, which lets doctors see exactly how much of the skull is affected and whether the sac contains meninges, brain tissue or both. Because an encephalocele can be associated with other problems, doctors examine the child closely to check.

How is an encephalocele treated?

GOSH says encephaloceles always require correction with an operation under general anaesthetic. Timing varies. If the sac is covered only by a thin membrane, surgery soon after birth is needed to prevent infection and damage or drying of the exposed tissue. If it is covered with skin, surgery can be delayed for a month or two to allow the baby to grow and develop.

The surgeon makes an incision near the encephalocele, cuts through the tough covering of the brain (the dura) and removes a portion of skull bone so that the meninges and/or brain tissue can be repositioned inside the skull. If hydrocephalus is present, a shunt is inserted to drain excess CSF into the abdomen. The dura is then repaired and the skull bone replaced, either with the removed portion or a patch of artificial material if there is not enough bone, and the incision is closed.

GOSH says close monitoring is needed in the first few hours after the operation to ensure CSF is not leaking and any shunt is working, with regular neurological observations at least for the first night. Many parents of children with no symptoms other than the lump choose surgery for cosmetic reasons and because of worry about injuries later in life, such as playing sport.

What is the outlook?

GOSH says the outlook is variable, depending on the location and the amount of meninges and brain tissue outside the skull, on any other problems present, and on whether the encephalocele is part of a syndrome. For a proportion of children the outlook is good, with few long-term effects on functions such as breathing, vision and hearing.

Children with learning disabilities benefit from support in education and day-to-day life, although a degree of independence may be possible. The majority of children with no learning disabilities grow up to lead a normal life, working and raising a family. Your child's neurosurgery team can give a more specific picture once they have the scan results.

Folic acid and planning another pregnancy

The NHS says folate helps reduce the risk of birth defects called neural tube defects, such as spina bifida. It recommends a 400 microgram folic acid supplement daily for anyone pregnant, trying for a baby or who could get pregnant, until 12 weeks of pregnancy, taken before getting pregnant. It says some women have an increased risk of a pregnancy affected by a neural tube defect and are advised to take a higher dose of 5mg each day until 12 weeks, which is unlikely to cause harm as it is short term, but to speak to a doctor first.

GOSH says an adequate intake of folic acid can dramatically reduce the risk of an encephalocele in future pregnancies, and that it can arrange a consultation with a genetic specialist for families with concerns. It also notes that a previous baby with a neural tube defect raises the chance for a future baby, so ask your doctor about the dose that is right for you before you conceive.

When to get urgent help

Families are looked after by a specialist team who will explain what to watch for. GOSH describes the risk of CSF leaking and of a shunt not working after surgery. If you are worried about a leak, a change in the lump, or your baby seems drowsy, feverish, unusually irritable or is having fits, contact your specialist team or NHS 111 straight away, and call 999 if a child is very unwell, floppy or hard to wake. Your specialist team should tell you who to call out of hours.

NHS and private pathways

On the NHS, an encephalocele found on a scan during pregnancy is referred to a fetal medicine and paediatric neurosurgery team, which will plan the birth and early surgery. If it is found at birth, the baby is transferred to a specialist paediatric neurosurgical centre. Surgery and follow-up are provided by NHS specialist children's units.

Private care for an encephalocele would need to be in a unit with paediatric neurosurgical, intensive care and neurodevelopmental support. Ask which team would manage an emergency, and keep the NHS team informed.

Frequently asked

Questions people ask.

Quick, plain-English answers to the questions we hear most.

  • What is an encephalocele?

    GOSH describes it as a rare congenital neural tube defect where part of the skull has not formed properly, so brain tissue and associated structures are outside the skull in a sac. It affects 1 to 2 in every 10,000 births.

  • What causes an encephalocele?

    The neural tube fails to close properly in the first weeks of pregnancy. GOSH says the causes of neural tube defects are not well understood, but folic acid can reduce the risk. Most encephaloceles occur out of the blue and are not passed on.

  • Is an encephalocele hereditary?

    GOSH says in most cases it develops sporadically and is not passed from parent to child, but it can be part of syndromes with a genetic component, and a family history of neural tube defects increases the risk.

  • How is an encephalocele diagnosed?

    GOSH says a large one may be seen on a routine prenatal ultrasound; otherwise it is usually visible at birth and confirmed with MRI, which shows how much of the skull is affected and what the sac contains.

  • How is an encephalocele treated?

    GOSH says it always needs an operation under general anaesthetic. Surgery repositions the tissue inside the skull, repairs the covering and closes the skull defect. A shunt is added if there is hydrocephalus.

  • When is surgery done?

    GOSH says if the sac is covered by only a thin membrane, soon after birth to prevent infection and damage to the exposed tissue. If skin-covered, surgery can wait a month or two to allow the baby to grow.

  • What is the outlook for a baby with an encephalocele?

    GOSH says it varies with location and how much tissue is outside the skull. For some the outlook is good with few long-term effects, and the majority of children without learning disabilities lead a normal life.

  • Can an encephalocele cause learning disabilities or seizures?

    Some children have developmental delay, learning disabilities, seizures or visual impairment, GOSH says, but many have no symptoms other than the lump.

  • How can I reduce the risk in another pregnancy?

    The NHS recommends folic acid before and during early pregnancy, 400 micrograms daily for most, and a higher 5mg dose for some women at increased risk after speaking to a doctor. GOSH says folic acid can dramatically reduce the risk of recurrence.

  • Where is an encephalocele treated in the UK?

    In specialist paediatric neurosurgical centres. GOSH is one that treats encephalocele; your fetal medicine or neonatal team will arrange referral.

Where this comes from

Sources and checking.

This guide is for information, not medical advice.

Your GP or consultant knows your history and can tell you which parts apply to you. If your symptoms are severe, rapidly worsening, or come with red-flag features, seek urgent medical care. Figures and availability change, so treat them as a guide and confirm with the provider.

Published 2026-10-18, next review 2027-10-18.