Pharmacogenetics
TPMT and NUDT15: genes that affect azathioprine and mercaptopurine
Azathioprine and mercaptopurine belong to a group called thiopurines, used for inflammatory bowel disease, some rheumatic conditions, transplant medicine and certain leukaemias. Two enzymes, TPMT and NUDT15, help the body handle them. Low activity of either can leave dangerous drug levels and suppress the bone marrow, which is why testing and monitoring come before and during treatment.
Last checked: 2026-10-03
Key facts
At a glance.
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What the enzymes do
TPMT converts thiopurines into inactive, non-toxic compounds, so low TPMT activity leaves more of the active drug in the body.
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Genetic variation
MedlinePlus Genetics reports more than forty low-activity versions of TPMT, with TPMT*3A and TPMT*3C accounting for over ninety per cent of deficiency cases.
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Two copies matter
People with two low-activity copies carry the highest toxicity risk; one low-activity copy gives a moderately increased risk.
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NHS wording
The NHS lists a history of low TPMT enzyme levels, or a rare inherited condition affecting NUDT15, among things to tell the doctor before azathioprine.
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Safety net
You have a blood test before starting azathioprine, and regular blood tests during treatment monitor the liver, kidneys and bone marrow.
Thiopurines in everyday practice
Thiopurines work by dampening overactive immune cells or by interfering with cell division in leukaemia. In the UK, azathioprine is used in conditions such as Crohn disease, ulcerative colitis, some forms of arthritis and after organ transplants, while mercaptopurine is used in inflammatory bowel disease and in leukaemia treatment.
Because they suppress blood-cell production in the bone marrow as part of how they work, the line between a useful effect and too much effect is narrower for some people than others. TPMT and NUDT15 are two of the reasons that line shifts.
What TPMT and NUDT15 do
MedlinePlus Genetics describes TPMT as the enzyme that turns thiopurine drugs off by metabolising them to inactive compounds. When the gene carries low-activity variants, less of the drug is switched off. Someone with two normal copies has an expected response. Someone with one low-activity copy and one normal copy has a moderately increased risk. Someone with two low-activity copies has the highest risk.
NUDT15 acts in a related part of thiopurine handling. The NHS azathioprine guidance mentions a rare inherited condition affecting the NUDT15 gene among reasons to speak to the doctor first. Frequencies of the variants differ between ancestries, and a result is read in that light by the laboratory and clinician.
The test, and what happens with each result
The NHS says you have a blood test before starting azathioprine to make sure it is safe for you. In practice the test may measure TPMT enzyme activity or look for gene variants, and local arrangements differ, so ask the clinic which approach it uses and how quickly results arrive.
Broadly, a normal result lets treatment proceed with routine monitoring. Reduced activity usually means the team considers a lower dose or a different medicine, and a very low result may mean thiopurines are avoided. The exact thresholds come from specialist guidance, not from patient information pages, and are not reproduced here.
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Normal activity: standard start, with regular blood tests.
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Intermediate activity: a cautious plan, often with a lower starting amount and closer monitoring.
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Very low or absent activity: usually an alternative treatment, because the risk of severe bone-marrow suppression is high.
Why testing does not replace blood monitoring
Even a normal enzyme result does not guarantee a safe course. Infection, other medicines, liver problems and individual differences can still lower blood counts. That is why the NHS explains that regular blood tests continue during treatment to monitor the liver, kidneys and bone marrow.
Expect more frequent tests at the start and after any dose change, then less often once things are stable. Keeping appointments for these tests is one of the most useful things a person on a thiopurine can do.
Warning signs to act on
NHS guidance tells people to stop azathioprine and contact a doctor or NHS 111 if they develop persistent fatigue, dizziness, vomiting or diarrhoea, a high fever with chills or breathing symptoms, unusual bleeding or bruising, unexplained lumps, confusion or weakness, or severe abdominal and back pain.
A rare serious allergic reaction needs 999: swelling of the lips, mouth or throat, severe difficulty breathing, or loss of consciousness. Long-term use raises skin-cancer risk, so the NHS advises sunscreen of at least SPF 30 and clothing that covers arms and legs.
Questions for your specialist team
Useful questions include whether your TPMT or NUDT15 status has been checked, how often blood tests will be needed, who to contact if a result is abnormal, and what to do about infections or planned vaccines. Your hospital team can answer the vaccine question for your own situation.
If a relative has had a severe reaction to a thiopurine, mention it, as it may prompt earlier testing.
Frequently asked
Questions people ask.
Quick, plain-English answers to the questions we hear most.
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What is TPMT?
Thiopurine methyltransferase, an enzyme that converts thiopurine medicines into inactive forms. Low activity means more active drug stays in the body.
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Do I need a TPMT test before azathioprine?
The NHS says you have a blood test before starting azathioprine to make sure it is safe. Ask your clinic whether it checks TPMT, NUDT15 or both.
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What is NUDT15?
Another gene involved in thiopurine handling. The NHS lists a rare inherited condition affecting NUDT15 as something to tell the doctor about before azathioprine.
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What happens if my TPMT activity is low?
The team may reduce the dose, monitor more closely or choose another medicine. Exact thresholds come from specialist guidance.
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Does a normal result mean I will not have side effects?
No. Regular blood tests continue because other factors can also lower blood counts.
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Which medicines are thiopurines?
Azathioprine, mercaptopurine and thioguanine. Azathioprine and mercaptopurine are the most commonly used.
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What symptoms mean I should contact a doctor?
The NHS lists persistent fatigue, high fever, unusual bleeding or bruising, severe abdominal pain and others. For allergic swelling or severe breathing difficulty call 999.
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Are TPMT variants rare?
Severe deficiency is uncommon, but MedlinePlus Genetics reports many low-activity variants, so it is worth testing before treatment rather than assuming.
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Can I take azathioprine if I am planning pregnancy?
The NHS lists pregnancy among things to discuss before taking it. Talk with your specialist about timing and alternatives.
Where this comes from
Sources and checking.
This guide is for information, not medical advice.
Your GP or consultant knows your history and can tell you which parts apply to you. If your symptoms are severe, rapidly worsening, or come with red-flag features, seek urgent medical care. Figures and availability change, so treat them as a guide and confirm with the provider.
Published 2026-10-03, next review 2027-10-03.
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MedlinePlus Genetics (US National Library of Medicine): TPMT gene (https://medlineplus.gov/genetics/gene/tpmt/), retrieved October 2026
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NHS medicines: Who can and cannot take azathioprine (https://www.nhs.uk/medicines/azathioprine/who-can-and-cannot-take-azathioprine/), retrieved October 2026
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NHS medicines: Side effects of azathioprine (https://www.nhs.uk/medicines/azathioprine/side-effects-of-azathioprine/), retrieved October 2026
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US Food and Drug Administration: Table of Pharmacogenetic Associations (https://www.fda.gov/medical-devices/precision-medicine/table-pharmacogenetic-associations), retrieved October 2026