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Conditions present at birth

Imperforate anus (anorectal malformation) in babies: signs, surgery and outlook

Imperforate anus is the most common form of anorectal malformation, a group of conditions in which a baby is born with the anus and rectum not formed or connected normally. It is usually recognised soon after birth and treated with surgery in stages. This guide explains the signs, the associated problems that are checked for, the operations and the long-term bowel care that follows.

Last checked: 2026-10-10

Key facts

At a glance.

  • Uncommon

    Royal Manchester Children's Hospital says about 1 in 3,500 to 5,000 babies are affected by anorectal malformations.

  • Not caused by parents

    Royal Manchester Children's Hospital says the causes are not known and it is not caused by something parents have done or not done. Bladder & Bowel UK says families need reassurance that there was nothing they could have done to cause or prevent it.

  • Diagnosed at birth

    Royal Manchester Children's Hospital says a doctor can diagnose it by looking at the baby's bottom after they are born, and the baby then has more tests to find out how it is affecting them.

  • Other conditions are checked

    Both sources describe VACTERL associations (spine, anus, heart, windpipe, food pipe, kidneys and limbs). Bladder & Bowel UK says about 50% of children with an ARM have other problems as well.

  • Staged surgery

    Royal Manchester Children's Hospital describes a temporary colostomy, then a PSARP operation to create a new anus, then stoma reversal. Babies are likely to need multiple surgeries.

  • Long-term bowel care

    Bladder & Bowel UK says the majority of children achieve full continence although they may need extra help, and that constipation can be a problem for all children born with an ARM.

What an anorectal malformation is

Bladder & Bowel UK explains that anorectal refers to the last part of the bowel: the anus, the opening through which poos are pushed out, and the rectum, the part of bowel before the anus. An anorectal malformation (ARM) is a group of conditions some babies are born with that affect the anus and rectum, according to Royal Manchester Children's Hospital.

The abnormality varies. Bladder & Bowel UK says the most common problem is imperforate anus, which is the absence of a normal anal opening. It describes forms in which the rectum ends in a blind pouch that does not connect with the anus, the rectum connects to the urinary or reproductive system so that poo leaks out at the wrong place, or the anus is narrowed (stenosis) or absent.

Types of ARM

Royal Manchester Children's Hospital lists the common types. Anal stenosis is when the anal opening is too small so that poo cannot easily be pushed through, and babies may strain or pass a very thin poo. Imperforate anus without a fistula is when the baby is born without an opening on the skin and the rectum is closed off. ARM with a fistula is when the rectum abnormally connects through a small tunnel of tissue to the skin between where the hole should be and the vagina or scrotum, or in boys sometimes to the urethra or bladder, so that poo may be passed from the penis.

Bladder & Bowel UK's diagrams show both 'high' and 'low' defects, in boys and in girls, and its guide notes that the type of surgery will depend on the malformation.

Signs in a newborn

Royal Manchester Children's Hospital lists the signs, which depend on the type: the baby has not had a poo by 2 days old, there is no hole for poo to come out, the opening is in a different place from where it should be (closer to the vagina or scrotum), poo leaks from the penis or around the vagina, poo is mixed with urine, vomiting, and swelling of the tummy.

Because a doctor can diagnose an ARM by looking at the baby after birth, it is usually recognised soon after delivery. The NHS newborn physical examination, done within 72 hours of birth and again at 6 to 8 weeks, is intended to find general problems so they can be treated early, and your midwife, health visitor or GP should be told promptly if a baby is not passing poo or has a swollen tummy or vomiting.

Associated conditions

Both sources describe the VACTERL group of conditions that an ARM is often associated with: vertebral (spine) abnormalities, anal malformation, cardiac (heart) defects, tracheal (windpipe) problems, oesophageal (food pipe) problems, renal (kidney and urinary tract) malformations and limb defects. Royal Manchester Children's Hospital says a baby is likely to have tests to check for problems with these body parts. Bladder & Bowel UK says Down syndrome, Hirschsprung's disease and narrowing of the intestine (duodenal atresia) may also be seen, and that the incidence of ARMs is increased in children with Down syndrome.

Investigations before surgery may include abdominal X-rays, abdominal and spinal ultrasound, an MRI scan, and an ECG to check for heart problems, according to Bladder & Bowel UK. Because some children have associated bladder problems, checks should be done to ensure the bladder is working normally.

Surgery

Royal Manchester Children's Hospital explains that without an anal opening in the correct place a baby has difficulty passing poo, which can lead to a blockage in the bowel and, if untreated, weakening and tearing of the bowel wall. While waiting for operation babies are likely to need a nasogastric tube to empty the stomach and prevent vomiting and a drip for fluids and antibiotics.

The staged operations described by Royal Manchester Children's Hospital
StageWhat happensNotes
1. Temporary colostomyPart of the colon is brought out onto the tummy wall so the baby can pass poo into a bagMost babies start feeding within a few days; parents are taught how to care for it; it stays for several months
2. PSARPPosterior sagittal anorectoplasty creates a new anus, moving the rectum from its abnormal positionUsually when the baby is at least several months old; a loopogram X-ray may be done first
3. Stoma reversalThe stoma is removed and both ends of the bowel joinedAfter healing from the PSARP and once the anus is large enough

Risks and complications

Royal Manchester Children's Hospital lists potential risks after surgery as bleeding, infection, breakdown of the wound, damage to surrounding structures, narrowing of the anal opening and mucosal prolapse. It says caring for the skin around the bottom is important because it can be very sensitive and that the team will show parents how to do this.

Bladder & Bowel UK notes that a colostomy can be a scary thing to contemplate initially, but that support is available from stoma nurses or paediatric community nurses who show parents how to care for it and how to obtain supplies.

Outlook and long-term bowel care

Royal Manchester Children's Hospital says each baby is different: some will grow up to have normal bowel function, but most will need long-term medication for constipation (laxatives) or help with continence, and a small number will need a permanent colostomy. It reviews babies with ARM in clinic until around 16 years old.

Bladder & Bowel UK says the majority of children achieve full continence, although they may need extra help, and that if the abnormality was extensive the child may need further surgery or regular bowel washouts. It recommends that all children start a bowel management programme as soon as possible after surgical correction is complete and before potty training. Constipation can be a problem and should be treated promptly with laxatives, good fluid intake and diet. Paediatric continence advisors and specialist nurses can support families with soiling, toilet training and constipation, and products to contain faeces may be supplied through the NHS.

NHS and private care

Anorectal malformations are treated on the NHS in specialist children's surgical services, such as the Manchester Centre for Neonatal Surgery whose parent information is used here, with continence advisors and stoma nurses supporting families. Private paediatric surgery exists, and the staged operations are the same. Ask which team will be responsible for your child in the long term and how to contact them if there is a problem with the stoma or bowel.

Frequently asked

Questions people ask.

Quick, plain-English answers to the questions we hear most.

  • What is imperforate anus?

    Bladder & Bowel UK describes it as the absence of a normal anal opening and the most common form of anorectal malformation.

  • How common is it?

    Royal Manchester Children's Hospital says about 1 in 3,500 to 5,000 babies are affected by anorectal malformations.

  • What causes it?

    The causes are not known. Royal Manchester Children's Hospital says it is not caused by something parents have done or not done, and the chance is higher if a baby has a close relative with the condition or other genetic conditions.

  • How is it diagnosed?

    A doctor can diagnose it by looking at the baby's bottom after birth, and more tests find out exactly how it is affecting the baby, according to Royal Manchester Children's Hospital.

  • What is VACTERL?

    A group of associated conditions affecting the spine, anus, heart, windpipe, food pipe, kidneys and limbs. Your baby is likely to have tests to check these body parts.

  • Will my baby need a colostomy?

    Often, in a staged plan. Royal Manchester Children's Hospital describes a temporary colostomy first, and Bladder & Bowel UK says it may be needed if the abnormality is severe.

  • What is a PSARP?

    A posterior sagittal anorectoplasty is a complex operation in which a new anus is created and the rectum moved from its abnormal position, usually when the baby is at least several months old.

  • Will my child be continent?

    Bladder & Bowel UK says the majority achieve full continence although they may need extra help. Royal Manchester Children's Hospital says most will need laxatives or help, and some a permanent colostomy.

  • Is constipation a problem afterwards?

    Yes. Bladder & Bowel UK says constipation can be a problem for all children born with an anorectal malformation and needs prompt treatment.

  • Where can families find support?

    Bladder & Bowel UK has guides for carers and lists other organisations. Specialist nurses, stoma nurses and paediatric continence advisors can also help.

Where this comes from

Sources and checking.

This guide is for information, not medical advice.

Your GP or consultant knows your history and can tell you which parts apply to you. If your symptoms are severe, rapidly worsening, or come with red-flag features, seek urgent medical care. Figures and availability change, so treat them as a guide and confirm with the provider.

Published 2026-10-10, next review 2027-10-10.