Procedure guide
Anal fistula surgery: fistulotomy, setons and what follows
An anal fistula is a small tunnel between the bowel and the skin near the anus, usually left after an abscess. It seldom heals by itself, so surgery is the usual treatment, and the type chosen depends mainly on how much sphincter muscle the tunnel crosses.
Last checked: 2026-10-03
Key facts
At a glance.
-
What it is
The NHS describes a small tunnel between the end of the bowel and the skin near the anus.
-
Main cause
Most develop after an anal abscess fails to heal properly; Crohn's disease and other conditions are less common causes.
-
Treatment
The NHS says anal fistulas usually require surgery as they rarely heal if left untreated.
-
Two main operations
Fistulotomy lays the tunnel open; a seton is a thread left in the tunnel for several weeks before a further procedure.
-
Hospital stay
Many people go home the same day; the NHS says some need a few days, and a London trust says most go home the same day.
What a fistula is, and why it is treated
A fistula forms when an infected gland near the anus drains but never fully closes, leaving a channel from the inside of the anal canal to a small opening on the skin. The NHS lists constant throbbing pain, worse when sitting, moving, passing a stool or coughing, skin irritation, foul-smelling discharge and sometimes pus or blood when opening the bowels. Swelling, redness and fever suggest an abscess.
Antibiotics can calm an infection, but they do not close the tunnel. The NHS says anal fistulas usually need surgery, and a Guy's and St Thomas' page describes surgery as the only curative treatment because the condition cannot heal independently.
Assessment before surgery
The surgeon needs to know where the tunnel runs relative to the sphincter muscles that control the bowel. That is established by an examination, often under anaesthetic, and sometimes a scan beforehand. If an underlying cause such as Crohn's disease is suspected, other tests may be arranged, since the NHS lists Crohn's, diverticulitis and other conditions among less common causes.
A pre-operative health check and medical history review take place, and Guy's and St Thomas' advises that sphincter involvement cannot always be predicted beforehand. This is the reason surgeons sometimes plan in stages.
The operations
Fistulotomy: the NHS describes cutting open the whole length of the fistula so it heals into a flat scar. It suits tunnels that cross little or no sphincter muscle.
Seton: the NHS describes a piece of surgical thread placed in the fistula and left for several weeks to help it heal before a further procedure. Guy's and St Thomas' explains that a seton goes through the tunnel and is tied outside to allow drainage while protecting sphincter function, since the surgeon cannot always tell beforehand how much muscle is involved. It adds that setons cause minimal discomfort and do not prevent bathing, using the toilet or pregnancy.
-
Complex or high tunnels may need staged surgery with a seton first.
-
Other techniques, such as flaps or plugs, exist for some fistulas and your surgeon will say if they apply.
Preparing for the day
Surgery uses general anaesthetic according to the Guy's and St Thomas' page. Follow your fasting instructions, bring loose clothes and sanitary pads for discharge, and arrange for an adult to take you home.
Risks
The main specific concern is bowel control. Cutting through sphincter muscle can affect continence, which is why surgeons favour a seton for deeper tunnels. The NHS lists potential bowel incontinence among the features of fistulas themselves, and the Guy's and St Thomas' page says seton placement prevents the risk of incontinence when involvement is uncertain.
Other risks include bleeding, infection, an abscess forming again, the fistula returning or healing slowly, and general anaesthetic risks. The pages used here give no percentages, so none are quoted; ask your surgeon about recurrence and continence figures for your type of fistula.
Recovery in outline
The NHS says many people do not need to stay in hospital overnight, although some may need a few days. A Guy's and St Thomas' page says most patients go home the same day unless complications arise. Expect a draining wound and the need for dressings or pads for some time, with healing taking weeks rather than days. Neither source gave a precise healing time, so follow your team's advice.
Keep the area clean, take regular painkillers, avoid constipation and report any increasing pain, fever, spreading redness or new swelling to your GP, NHS 111 or the hospital. Call 999 for severe symptoms such as rapidly worsening pain with high fever and feeling very unwell.
Questions to ask, and NHS or private
Specialist colorectal surgeons treat fistulas in both settings. Waits, choice of surgeon and the arrangement for staged operations differ, so ask whether further procedures are included in a private quotation.
-
Where does my tunnel run in relation to the sphincter?
-
Do you recommend a fistulotomy or a seton, and why?
-
How many stages might be needed?
-
How will you look after my bowel control?
Frequently asked
Questions people ask.
Quick, plain-English answers to the questions we hear most.
-
Can an anal fistula heal on its own?
Rarely. The NHS says anal fistulas usually require surgery as they rarely heal if left untreated, although symptoms can come and go.
-
What causes it?
Most commonly an anal abscess that did not heal properly, according to the NHS. Crohn's disease and other conditions are less frequent causes.
-
What is a seton?
A piece of surgical thread passed through the fistula tunnel. The NHS says it is left in place for several weeks before a further procedure, and it allows drainage.
-
Does having a seton hurt?
Guy's and St Thomas' says setons cause minimal discomfort and do not limit bathing, toileting or pregnancy, though some people feel pulling or tenderness.
-
What is a fistulotomy?
The NHS describes cutting open the fistula along its whole length so it heals into a flat scar. It is chosen when little sphincter muscle is involved.
-
Will I lose control of my bowels?
That is the main concern with fistula surgery. Surgeons choose the operation partly to protect continence, and your risk depends on the tunnel; ask your surgeon for specifics.
-
Do I need to stay overnight?
Often not. The NHS says many people do not, though some stay a few days, and Guy's and St Thomas' says most go home the same day.
-
Will I need more than one operation?
Possibly. A seton is placed to heal the tunnel before a further procedure, as the NHS describes, and complex fistulas are often staged.
-
When should I seek urgent help afterwards?
For increasing pain, fever, spreading redness, new swelling or heavy bleeding. Contact your hospital or NHS 111, or 999 if you feel very unwell.
Where this comes from
Sources and checking.
This guide is for information, not medical advice.
Your GP or consultant knows your history and can tell you which parts apply to you. If your symptoms are severe, rapidly worsening, or come with red-flag features, seek urgent medical care. Figures and availability change, so treat them as a guide and confirm with the provider.
Published 2026-10-03, next review 2027-10-03.
-
NHS - Anal fistula (https://www.nhs.uk/conditions/anal-fistula/), retrieved October 2026
-
Guy's and St Thomas' NHS Foundation Trust - Anal fistula treatment: surgery (https://www.guysandstthomas.nhs.uk/health-information/anal-fistula-treatment/surgery), retrieved October 2026
-
GOV.UK - Surgery and driving (https://www.gov.uk/surgery-and-driving), retrieved October 2026